Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015888619.1_cds_XP_016443215.1_38394
CDS Infomation

[gene=LOC107768608] [db_xref=GeneID:107768608] [protein=TMV resistance protein N-like] [protein_id=XP_016443215.1] [location=join(15247..15764,15977..17078,17158..17601,17712..19163)] [gbkey=CDS]
Sequence

ATGTTCATGATGAGAGCTGAAAAGGCATCGTTCTCCAGTCCTAGATGCCCTTATCATGTA
TACTTGAGTTATAGAGGCCAAGAGATCAGTATGAACTTCATCAATCTTCTGCACACGGAA
TTGACACGTGTAGGTCTTCGAACATTCAAGAAACATGGTGAAGCTAGGAAAGGAAAGATT
GTTGGATCAGAATTGCAAAAAGCATTCAAGGAAGCGAGAATTTCAATAATTGTATTCTCG
GAAGATTATGCATACTCTAGAAGGTGCCTAGATGAACTTGTGAACATCCTGGAAAGGAAG
TTCAGTGCCGGTCATATGATTCTACCTGTGTTCTATCATATGGATCCATCCCATGTGAGA
AAGCAGAAAGGATCTTATGCAAAAGCGCTTCATAATTATGAAGAGCAGATCATGGGGGGG
AAGGGTGAAAGAAGGAATGAGCAGATAGCAAAGGTGAAGATATGGAGAGCATCTCTCAAG
GAGGTTGCAAATATGGCAGGGATAGTTCTAGAAGACGGGGATGAGTTAACGTTTATTCAA
GAAATTGTTGAGGACATCTGGGGTAAGATGAGTCGCAAAGTTTTGAGTATTGCCCAATAT
CCAGTTGGAATATATCACCGCGTGAAAGAGATCAGTTTCTGGTTACAAGATAGCTTGACT
GGTGCTCATACATTGATGATTTATGGAGAACCTGGAATAGGGAAAACAACCATTGCCAGA
GCTCTTTTTAACCTACATTGTGACAGATTTCAGTACAGCAGTTTTCTTGCAAATATTCGA
GAAATTGCAAAAGAAAGCAGCAGTCTAATTAGCCTACAGAAAAATCTGCTTTCAGATCTT
TTGAAAGAGGATAGGATTGATCTATATGATATTGATGGGGGAGCTTCTAAGATCAAAGAA
TTTTTGGTTCACAGAAGGTTTCTTTTGGTTCTTGATGATGTTGATGATTTGGACCAACTG
AAAGCATTACTTGATTCAAGAGATTGGATTCCTCCTGGGAGTAAAGTTATTATAACAACT
ACAAATAAAAGCTTGGTAAACCCTCACGATGCTTGTGTGATGTATGAAGCCAAGAGGTTT
GACATTCCTGAGGCGCTTCAGCTCTTCAGCTTGCATACTTTTGGTCAAGACCATCCCGCC
AAGGAGTACATGATGCAATCCAAACAGATAGTTAAACATTGTCGAGGGGTTCCTTTAGCT
CTTCAAGTTCTAGCCTCTTCGCTACGTGGTGGAAGTATAGATTTATGGGAAGCTGCAATA
AATAAATTAGAAAGATATTCTGAATTCCATAAACATAAAATTCTTGAACTAAGCTATGAA
GCTTTGCCTGATGACCATGAGAAAAATGTATTTCTTGATATTGCTTGCTTCTTTGTTGGA
AAGGACAAAGATTATACAATCAAAATTCTTGATGAATGTGGTTTCCATGCTACTGCTGAA
ATACAGAATCTCATCGATAGATGTCTTCTGACAGTGACTCCTGAAAACAAGCTAATGATG
CACCAGTTACTACAAGAAATGGGTAAAGAGGTCATCTGCCGAGAATCGCCCACAGAACCT
GGTAAACGCAGCAGAATCTGGCATCACAAGGATGCCCTCAGTATACTGCAGGAAGAAACT
GTTACAGAATCTATTGAGGGGCTCACTCTTAAAATGCGTGGATCAGATGAAAGCAAATCA
GACAAACATGAAAATATGTCAAAAAGACCTCACTGTGATGATTCACCGAATACTTCAACA
TTGATTCTCAAAAACTCATCAAAGAGGCTTTGCCTACGCTTTTTCTCTTGGCGTCAAGTA
AATTCTGTTTCGGCAAGATCACAGACTGCACCAAATGAAGCTGGAATAAGTTCTAAAGCA
TTTTTTAAAATGCAAGAACTGAGATTTCTTGAGCTTGATAATGTGCAGCTTTCTGGCACC
TATGAAGGATTTCCAAAGAAATTAAGATGGATGTGCTGGTATCAATTCCAATTAACTTCC
TTTCCAAGTGGCTTCCCTCTAGAAAATCTTGTAGTTCTTGAAATGAGCAATAGCAACTTG
CACCAAACATGGGAGGGAGCAAAGTCTCTCCGATCATTGAAGATACTTGATCTTAGTCAC
TCACGCCATCTCATGAAGACCCCTGACTTCTCTGGACTGCCGAGTTTAGAAAGAGTTATT
CTTGAACATTGCATAGGTTTGGTTAAGGTCCATGAGTCCATTGGAAGACTTCATAAACTT
CTTGTTTTAAATCTGAAGGGATGCGAGAGCCTTAGGAAGCTTCCAAGGAAGATGAGGGAA
ATAAAATCGTTAGAAGAACTAACACTCTGTGGGTGCTCGAAGCTGGAGTTTTCCACGACA
ATGCGAAATCAATTTTTTTTGCAAGCACTTCTGCAGAATGTGACTAACAGAAATCAACTT
GCCTCTAAGGGTGAAAAGCCAATATGTAGTGACTCTCTGGCTGCTAAATCTGTCTATTCA
ATTTTCTGGTCTTGGATGTCACCGTGGCCAAAGTCAGCACGTTCAATGTCAGAACTCTTT
CAGATCACCTTACAAAGTTTGGATATTTCACATTGCAATCTGACTGGCACTTTTATTCCC
TATGATCTTTCTGTCTTGTCCTCCTTAAAATATCTGAATTTAAGAGGAAATCCCATTACT
ACCCTGCCAGAGAGCCTGAAGAGCCTAACTGTGCTGCAGTCCCTTCAGTTAGCTGACTGC
ACAAAGCTCCAGTGGATCCCGGAACTTCCATTGAGTTTACAATTATTGAATGCACGTAAC
TGCATATCACTGAATAGAGTAACAAATCTACCCAACTTCATGAGGTCACTTGACTTGCAC
CTAGAGAATTGTGGAAATCTGGTTGAGGTTCAGGGAGTATTCAAGCTAGATCCTATTGAT
GATATTGTTGTTGTATCTTGCCTAGATAATTTGGAGGTCCGAGCAGTAGATGTGGAACTT
TGCAACTATCTGACCTCAACGAAAAGCAAAGGTCCCGTTCAGGGACTCTATGAATTTGGT
ATACACAGCATTTTCATTCCTGGAGGCAAGGTTCCTACCGAGTTCAATAATATAAGCACA
GGGAGCTCATTAGCTTTCTCTGTGCCTCAACTTCCTAACATCAAGACACAAGGATTAGAG
ATATGCATTGCTTATGTAGAATGTTATGACGAATGTTTCAGCCAAAGTCACTTCATAAAA
GTGAGCAATAAAACCAAGAGGATCAAATGGAATTATGGTCCAACGGTTTTTGGGATTGCA
ACTCCTGGTAATCCAATGCTATGGTTAAGTCGTTGGAAGTTTGGAGATCAGCTAGAAAAA
GGAGATCAAGTTGTTGTCTCCTTAAGCATGAGTTGCTTGGTTAGGGAATTTGGTGCCCAT
CTTGTATGCAGTGAACAAAGGGAGGAAGACACCCTATCTGAGAATACAAAGGAGGGATGT
CGTCGTCCCTGCTATCCACTTCATCATGCAATTGGAGGAGATTTGTCTCCTTATGAGCTA
AGCTCAGGCGTCTATCACCTCTCCATTTATTCTTGA

Peptide Sequence

PEP ID

XP_016443215.1
PEP Infomation

PREDICTED: TMV resistance protein N-like [Nicotiana tabacum]
Sequence

MFMMRAEKASFSSPRCPYHVYLSYRGQEISMNFINLLHTELTRVGLRTFKKHGEARKGKI
VGSELQKAFKEARISIIVFSEDYAYSRRCLDELVNILERKFSAGHMILPVFYHMDPSHVR
KQKGSYAKALHNYEEQIMGGKGERRNEQIAKVKIWRASLKEVANMAGIVLEDGDELTFIQ
EIVEDIWGKMSRKVLSIAQYPVGIYHRVKEISFWLQDSLTGAHTLMIYGEPGIGKTTIAR
ALFNLHCDRFQYSSFLANIREIAKESSSLISLQKNLLSDLLKEDRIDLYDIDGGASKIKE
FLVHRRFLLVLDDVDDLDQLKALLDSRDWIPPGSKVIITTTNKSLVNPHDACVMYEAKRF
DIPEALQLFSLHTFGQDHPAKEYMMQSKQIVKHCRGVPLALQVLASSLRGGSIDLWEAAI
NKLERYSEFHKHKILELSYEALPDDHEKNVFLDIACFFVGKDKDYTIKILDECGFHATAE
IQNLIDRCLLTVTPENKLMMHQLLQEMGKEVICRESPTEPGKRSRIWHHKDALSILQEET
VTESIEGLTLKMRGSDESKSDKHENMSKRPHCDDSPNTSTLILKNSSKRLCLRFFSWRQV
NSVSARSQTAPNEAGISSKAFFKMQELRFLELDNVQLSGTYEGFPKKLRWMCWYQFQLTS
FPSGFPLENLVVLEMSNSNLHQTWEGAKSLRSLKILDLSHSRHLMKTPDFSGLPSLERVI
LEHCIGLVKVHESIGRLHKLLVLNLKGCESLRKLPRKMREIKSLEELTLCGCSKLEFSTT
MRNQFFLQALLQNVTNRNQLASKGEKPICSDSLAAKSVYSIFWSWMSPWPKSARSMSELF
QITLQSLDISHCNLTGTFIPYDLSVLSSLKYLNLRGNPITTLPESLKSLTVLQSLQLADC
TKLQWIPELPLSLQLLNARNCISLNRVTNLPNFMRSLDLHLENCGNLVEVQGVFKLDPID
DIVVVSCLDNLEVRAVDVELCNYLTSTKSKGPVQGLYEFGIHSIFIPGGKVPTEFNNIST
GSSLAFSVPQLPNIKTQGLEICIAYVECYDECFSQSHFIKVSNKTKRIKWNYGPTVFGIA
TPGNPMLWLSRWKFGDQLEKGDQVVVSLSMSCLVREFGAHLVCSEQREEDTLSENTKEGC
RRPCYPLHHAIGGDLSPYELSSGVYHLSIYS

Transcript Sequence

Gene sequence data has not been registered.